Background Information.
Antibodies can be designed so their
binding regions mimic enzyme active sites. The paper “Immune Versus
Natural Selection: Antibody Aldolases with Enzymic Rates but Broader Scope”
investigates one such antibody. The antibody 33F12 (Ab
33F12) is a catalytic Ab with aldolase activity. Aldolases typically
catalyze an aldo condensation reaction which is the joining of two carbonyl
containing molecules (i.e. aldehyde or ketone) to form an aldol (beta-hydroxy-carbonlyl).
The basic aldolase mechanism
involves a reactive lysine on the enzyme which serves as a nucleophile
and attacks the carbonyl carbon of the first molecule (aldehyde or keytone)
to form a Schiff base. The Schiff base collapses through an
enamine intermediate as a second carbonyl is attacked. The
lysine forms a second Schiff base, which allows the aldol to be hydrated
and the free enzyme is restored. (see the mechanism below).
Now lets look at 33F12
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